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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015801881.1_cds_XP_016477384.1_6882
CDS Infomation

[gene=LOC107798867] [db_xref=GeneID:107798867] [protein=vacuolar protein-sorting-associated protein 33 homolog] [protein_id=XP_016477384.1] [location=join(15754..15806,15891..15930,16042..16122,17448..17642,17736..17846,17937..18002,18122..18229,18333..18377,19174..19230,19378..19413,19550..19744,19900..19956,20241..20303,20388..20494,21215..21337,21451..21532,21617..21687,21856..21936,22341..22398,22513..22574,23317..23410,23748..23837)] [gbkey=CDS]
Sequence

ATGGCGCAAGTTCCCAATTTGGATAACGCTCCCATAAATCTGAAATCTCTAAGAGATCAA
TCGCTGAAAGAACTTATTACGGTTTTGAAGAACATTAGGGGGAAAAAGTGTTTGGTAATT
GATCCTAAGCTTGGCGGGTCACTCTCTCTTATTGTACAGAGCTCACTTCTCAAGGAGCAT
GGGGCCGAATTGAGGCATCTTAATGCGGAACCAGTTCAAACTGATTGCACGAAAGTAGTT
TATCTAGTCAGAGCTCAGCTTGACTTGATGAAGTTCATTTGCTCACACATCCATAATGAT
ATTTCTAAAGGGATTCAAAGGGAGTATTTTGTTTATTTTGTCCCTCGTCGTGCAGTTGCA
TGTGAGAAGATACTTGAGGAAGAAAAAGTTCATCACTTGTTGACTATAGGGGAGTATCCC
CTTTATCTTATTCCACTGGATGAGGATGTATTATCATTTGAACTTGATGTTGCTCACAAA
GAGTACCTAGTTGATGGGGACACTACCTCCCTGTGGCACATAGCAAAAGCTCTCCATAAA
CTCGAGTTTTCCTTTGGAGTGATTCCAAATGTGAGGGCCAAAGGAAAAGCATCAGTTCGT
GTTGCTGACATTTTGAATCGGATGCAATTGGAAGAACCTGTGAACACATCTGAGATGGGT
GTACCTGAAATAAATACTATCATCCTCTTGGACAGAGAGGTGGATATGATAACTCCAATG
TGTTCGCAGTTAACATATGAAGGGCTGCTGGATGAGGCTTCATGCAGTTTCTTGNGCACA
ATAAATTCTTGTTCAGATGTGACCACTGGGAAATACACATCTACTATTTTTTGTCTCTTT
TTAAAAGAAAAAAAGAGTTGTCTTATTTTGACGTTTTCTCCGTGCCTTAGACGTTTTATT
TCTCTGTTTGAAATATTAATTCATTGCCTTTGTAGTGACAAGTTGTTCAAAGAGATACGG
GACCAGAACTTTGAAGTTGTTGTCCAGGTTCTACGTCAAAAAGCAACTTCCATGAAGCAA
GATTACTCAGAGATGCAGACTACGACCCAGACAGTCTCCGAATTGAAGGATTTTGTCAAA
AAGCTGAACTCATTGCCAGAAATGACTAGACACATAAATCTTGCTCAGCATTTAACTACA
TTTACATCCAAACCTTCATTCCTTGGCCGACTTGATATGGAGCAAACTCTTGTTGAGGCT
GAAAGCTATGATATATGCTTTGAGTACATTGAGGAAATGATCCATAAGCAAGAGCCACTT
ATCAATGTTCTACGTCTTCTTGTCCTGTTCTCAATAACAAATTCAGGGTTGCCCAAGAAA
AACTTTGACTATTTGAGGCGAGAACTGCTTCACAGCTATGGTTTTGAGCATATAGCAACC
TTGAATAATTTGGAGAAGTCTGGATTGCTTAAGAAACAGGAGACTAAAAGCAATTGGGTA
ACAATTAAACGTGCTCTGCAGCTCGTAGTGGAGGATATTGATACTGCTAATCCCAACGAT
ATCTCCTATGTCTTCTCTGGGTATGCACCTCTCAGTATTCGCCTGGTTCAACATGCAATT
CGATCTGGGTGGCGGCCGATTGAAGAAATATTGAAGCTGCTGCCAGGTCCACACTCAGAT
ATTAAGAGGGGTGGATTTTCCAGCAGTCCGTCATTGGACACATTAAACGGGTCTTTGCAT
GGCTCGGACAAAGTTGTTGATGGAAGGCGTTCTTTGATTCTTGTTGTTTTCATTGGCGGA
GTGACATCTGCAGAGATCTCTGCTCTTCGTTTCCTGAGCGGCCAGGAAGGGATGGCATAT
GACATAATTGTAGCAACTACAAAAATTGTCAATGGAAGCACATTGACAGAAACATTTGTG
GAAAAATTGGGTTGA

Peptide Sequence

PEP ID

XP_016477384.1
PEP Infomation

PREDICTED: vacuolar protein-sorting-associated protein 33 homolog [Nicotiana tabacum]
Sequence

MAQVPNLDNAPINLKSLRDQSLKELITVLKNIRGKKCLVIDPKLGGSLSLIVQSSLLKEH
GAELRHLNAEPVQTDCTKVVYLVRAQLDLMKFICSHIHNDISKGIQREYFVYFVPRRAVA
CEKILEEEKVHHLLTIGEYPLYLIPLDEDVLSFELDVAHKEYLVDGDTTSLWHIAKALHK
LEFSFGVIPNVRAKGKASVRVADILNRMQLEEPVNTSEMGVPEINTIILLDREVDMITPM
CSQLTYEGLLDEASCSFLXTINSCSDVTTGKYTSTIFCLFLKEKKSCLILTFSPCLRRFI
SLFEILIHCLCSDKLFKEIRDQNFEVVVQVLRQKATSMKQDYSEMQTTTQTVSELKDFVK
KLNSLPEMTRHINLAQHLTTFTSKPSFLGRLDMEQTLVEAESYDICFEYIEEMIHKQEPL
INVLRLLVLFSITNSGLPKKNFDYLRRELLHSYGFEHIATLNNLEKSGLLKKQETKSNWV
TIKRALQLVVEDIDTANPNDISYVFSGYAPLSIRLVQHAIRSGWRPIEEILKLLPGPHSD
IKRGGFSSSPSLDTLNGSLHGSDKVVDGRRSLILVVFIGGVTSAEISALRFLSGQEGMAY
DIIVATTKIVNGSTLTETFVEKLG

Transcript Sequence

Gene sequence data has not been registered.